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Phylogenomic analysis of a 55.1-kb 19-gene dataset resolves a monophyletic fusarium that includes the fusarium solani species complex

  • David M. Geiser
  • , Abdullah M.S. Al-Hatmi
  • , Takayuki Aoki
  • , Tsutomu Arie
  • , Virgilio Balmas
  • , Irene Barnes
  • , Gary C. Bergstrom
  • , Madan K. Bhattacharyya
  • , Cheryl L. Blomquist
  • , Robert L. Bowden
  • , Balazs Brankovics
  • , Daren W. Brown
  • , Lester W. Burgess
  • , Kathryn Bushley
  • , Mark Busman
  • , Jose F. Cano-Lira
  • , Joseph D. Carrillo
  • , Hao Xun Chang
  • , Chi Yu Chen
  • , Wanquan Chen
  • Martin Chilvers, Sofia Chulze, Jeffrey J. Coleman, Christina A. Cuomo, Z. Wilhelm de Beer, G. Sybren de Hoog, Johanna Del Castillo-Munera, Emerson M. Del Ponte, Javier Dieguez-Uribeondo, Antonio Di Pietro, Veronique Edel-Hermann, Wade H. Elmer, Lynn Epstein, Akif Eskalen, Maria Carmela Esposto, Kathryne L. Everts, Sylvia P. Fernandez-Pavıa, Gilvan Ferreira da Silva, Nora A. Foroud, Gerda Fourie, Rasmus J.N. Frandsen, Stanley Freeman, Michael Freitag, Omer Frenkel, Kevin K. Fuller, Tatiana Gagkaeva, Donald M. Gardiner, Anthony E. Glenn, Scott E. Gold, Thomas R. Gordon, Nancy F. Gregory, Marieka Gryzenhout, Josep Guarro, Beth K. Gugino, Santiago Gutierrez, Kim E. Hammond-Kosack, Linda J. Harris, Monika Homa, Cheng Fang Hong, Laszlo Hornok, Jenn Wen Huang, Macit Ilkit, Adriaana Jacobs, Karin Jacobs, Cong Jiang, Marıa del Mar Jimenez-Gasco, Seogchan Kang, Matthew T. Kasson, Kemal Kazan, John C. Kennell, Hye Seon Kim, H. Corby Kistler, Gretchen A. Kuldau, Tomasz Kulik, Oliver Kurzai, Imane Laraba, Matthew H. Laurence, Theresa Lee, Yin Won Lee, Yong Hwan Lee, John F. Leslie, Edward C.Y. Liew, Lily W. Lofton, Antonio F. Logrieco, Manuel S. Lopez-Berges, Alicia G. Luque, Erik Lysøe, Li Jun Ma, Robert E. Marra, Frank N. Martin, Sara R. May, Susan P. McCormick, Chyanna McGee, Jacques F. Meis, Quirico Migheli, N. M.I. Mohamed Nor, Michel Monod, Antonio Moretti, Diane Mostert, Giuseppina Mule, Françoise Munaut, Gary P. Munkvold, Paul Nicholson, Marcio Nucci, Kerry O’Donnell, Matias Pasquali, Ludwig H. Pfenning, Anna Prigitano, Robert H. Proctor, Stephane Ranque, Stephen A. Rehner, Martijn Rep, Gerardo Rodrıguez-Alvarado, Lindy Joy Rose, Mitchell G. Roth, Carmen Ruiz-Roldan, Amgad A. Saleh, Baharuddin Salleh, Hyunkyu Sang, Marıa Mercedes Scandiani, Jonathan Scauflaire, David G. Schmale, Dylan P.G. Short, Adnan Sisic, Jason A. Smith, Christopher W. Smyth, Hokyoung Son, Ellie Spahr, Jason E. Stajich, Emma Steenkamp, Christian Steinberg, Rajagopal Subramaniam, Haruhisa Suga, Brett A. Summerell, Antonella Susca, Cassandra L. Swett, Christopher Toomajian, Terry J. Torres-Cruz, Anna M. Tortorano, Martin Urban, Lisa J. Vaillancourt, Gary E. Vallad, Theo A.J. van der Lee, Dan Vanderpool, Anne D. van Diepeningen, Martha M. Vaughan, Eduard Venter, Marcele Vermeulen, Paul E. Verweij, Altus Viljoen, Cees Waalwijk, Emma C. Wallace, Grit Walther, Jie Wang, Todd J. Ward, Brian L. Wickes, Nathan P. Wiederhold, Michael J. Wingfield, Ana K.M. Wood, Jin Rong Xu, Xiao Bing Yang, Tapani Yli-Mattila, Sung Hwan Yun, Latiffah Zakaria, Hao Zhang, Ning Zhang, Sean X. Zhang, Xue Zhang
  • Department of Plant Pathology and Environmental Microbiology
  • Pennsylvania State University
  • Directorate General of Health Services
  • Ministry of Health, Oman
  • National Agriculture and Food Research Organization
  • Tokyo University of Agriculture and Technology
  • Dipartimento di Agraria
  • University of Sassari
  • Department of Biochemistry
  • University of Pretoria
  • Plant Pathology and Plant-Microbe Biology Section
  • Cornell University
  • Iowa State University
  • State of California
  • United States Department of Agriculture
  • Wageningen University & Research
  • Mycotoxin Prevention and Applied Microbiology Research Unit
  • University of Sydney
  • Department of Plant and Microbial Biology
  • University of Minnesota Twin Cities
  • Universitat Rovira i Virgili (URV)
  • University of Florida
  • Department of Plant Pathology and Microbiology
  • National Taiwan University
  • Department of Plant Pathology
  • National Chung Hsing University
  • State Key Laboratory for Biology of Plant Diseases and Insect Pests
  • Chinese Academy of Agricultural Sciences
  • Department of Plant
  • Michigan State University
  • Research Institute on Mycology and Mycotoxicology
  • Universidad Nacional de Rio Cuarto
  • Auburn University
  • Broad Institute
  • Department of Medical Mycology and Infectious Diseases
  • Radboud University Nijmegen
  • University of California
  • Departamento de Fitopatologia
  • Universidade Federal de Viçosa
  • Department of Mycology
  • Real Jardín Botánico RJB-CSIC
  • Departamento de Genetica
  • University of Córdoba
  • INRAE
  • Department of Plant Pathology and Ecology
  • Connecticut Agricultural Experiment Station
  • University of Milan
  • University of Maryland, College Park
  • Laboratorio de Patologıa Vegetal
  • Universidad Michoacana de San Nicolas de Hidalgo
  • Empresa Brasileira de Pesquisa Agropecuária
  • Agriculture and Agri-Food Canada
  • Department of Biotechnology and Biomedicine
  • Technical University of Denmark
  • Department of Plant Pathology and Weed Research
  • Agricultural Research Organization of Israel
  • Department of Biochemistry and Biophysics
  • Oregon State University
  • University of Oklahoma
  • Laboratory of Mycology and Phytopathology
  • Russian Academy of Agricultural Sciences
  • CSIRO
  • 42
  • Department of Plant and Soil Sciences
  • University of Delaware
  • Genetics
  • University of The Free State
  • Unitat de Microbiologia
  • Universidad Rovira i Virgili
  • Department of Molecular Biology
  • University of Leon
  • Department of Biointeractions and Crop Protection
  • Rothamsted Research
  • University of Szeged
  • Institute of Plant Protection
  • Hungarian University of Agriculture and Life Sciences
  • Division of Mycology
  • Cukurova University
  • Biosystematics Unit
  • Agricultural Research Council
  • Department of Microbiology
  • Stellenbosch University
  • College of Plant Protection
  • Northwest Agriculture and Forestry University
  • Division of Plant and Soil Sciences
  • West Virginia University
  • Biology Department
  • Saint Louis University
  • Department of Botany and Nature Protection
  • University of Warmia and Mazury in Olsztyn
  • Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute
  • Royal Botanic Garden and Domain Trust
  • Microbial Safety Team
  • Rural Development Administration
  • Seoul National University
  • Department of Plant Pathology
  • Kansas State University
  • National Research Council of Italy
  • Universidad Nacional de Rosario
  • Division of Biotechnology and Plant Health
  • Norwegian Institute of Bioeconomy Research
  • University of Massachusetts
  • Crop Improvement and Protection Research Unit
  • Dipartimento di Agraria and Nucleo Ricerca Desertificazione
  • School of Biological Sciences
  • Universiti Sains Malaysia
  • Laboratoire de Mycologie
  • University of Lausanne
  • Department of Plant Pathology
  • Department of Plant Pathology and Microbiology
  • Department of Crop Genetics
  • John Innes Centre
  • Universidade Federal do Rio de Janeiro
  • Department of Food
  • Departamento de Fitopatologia
  • Universidade Federal de Lavras
  • Aix-Marseille Université
  • Mycology and Nematology Genetic Diversity and Biology Laboratory
  • University of Amsterdam
  • Department of Plant Pathology
  • University of Wisconsin-Madison
  • Department of Plant Protection
  • King Saud University
  • Department of Integrative Food
  • Chonnam National University
  • Centre de Recherche et de Formation Agronomie
  • Haute Ecole Louvain en Hainaut
  • School of Plant and Environmental Sciences
  • Virginia Polytechnic Institute and State University
  • Amycel/Spawn Mate
  • Department of Ecological Plant Protection
  • University of Kassel
  • School of Forest Resources and Conservation
  • Department of Biological Sciences
  • State University of New York Binghamton University
  • Department of Microbiology and Plant Pathology
  • University of California at Riverside
  • Life Science Research Center
  • Gifu University
  • Department of Plant Pathology
  • University of Kentucky
  • Indiana University Bloomington
  • Department of Microbial Biochemical and Food Biotechnology
  • United States Department of Energy
  • Department of Microbiology
  • University of Texas Health Science Center at San Antonio
  • Purdue University
  • Department of Biochemistry
  • University of Turku
  • Department of Medical Biotechnology
  • Soonchunhyang University
  • Department of Plant Biology
  • Rutgers - The State University of New Jersey, New Brunswick
  • Johns Hopkins University

Research output: Contribution to journalArticlepeer-review

202 Citations (Scopus)

Abstract

Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user’s needs and established successful practice. In 2013, the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus Fusarium into seven genera, including the FSSC described as members of the genus Neocosmospora, with subsequent justification in 2018 based on claims that the 2013 concept of Fusarium is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a genus Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus Neocosmospora were recombined in genus Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural, and practical taxonomic option available.

Original languageEnglish
Pages (from-to)1064-1079
Number of pages16
JournalPhytopathology
Volume111
Issue number7
DOIs
Publication statusPublished - Jul 2021

Keywords

  • Evolution
  • Fungal pathogens

ASJC Scopus subject areas

  • Agronomy and Crop Science
  • Plant Science

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