Energy stable model reduction of neurons by nonnegative discrete empirical interpolation

David Amsallem, Jan Nordstrom

Research output: Contribution to journalArticlepeer-review

13 Citations (Scopus)

Abstract

The accurate and fast prediction of potential propagation in neuronal networks is of prime importance in neurosciences. This work develops a novel structure-preserving model reduction technique to address this problem based on Galerkin projection and nonnegative operator approximation. It is first shown that the corresponding reduced-order model is guaranteed to be energy stable, thanks to both the structure-preserving approach that constructs a distinct reducedorder basis for each cable in the network and the preservation of nonnegativity. Furthermore, a posteriori error estimates are provided, showing that the model reduction error can be bounded and controlled. Finally, the application to the model reduction of a large-scale neuronal network underlines the capability of the proposed approach to accurately predict the potential propagation in such networks while leading to important speedups.

Original languageEnglish
Pages (from-to)B297-B326
JournalSIAM Journal of Scientific Computing
Volume38
Issue number2
DOIs
Publication statusPublished - 2016
Externally publishedYes

Keywords

  • Discrete empirical interpolation
  • Hodgkin-Huxley equation
  • Model reduction
  • Nonnegative reduced basis
  • Summation-by-parts operators

ASJC Scopus subject areas

  • Computational Mathematics
  • Applied Mathematics

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